Hello,
RGBA values are ones sent by the underlying layer (the OS). MSS does not alter that data, so if that does not work for you, I am afraid there is nothing that can be done on the MSS level.
Originally posted by @BoboTiG in #151 (comment)
In the windows.py, the following comments seems to strip off the alpha channel data:
Lines 237 to 242 in 229bd0b
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